NERC Data Catalogue Service
Murine faecal metagenome data
This data is NERC-funded but not held by the EIDC. This data is archived in the National Center for Biotechnology Information (NCBI). Data consists of metagenomic datasets of faecal pellets collected from six-week old C57Bl/6 female mice orally infected with Citrobacter rodentium harbouring genetically modified antimicrobial resistance plasmids pC15-1a or RP4, respectively. Infections performed in May 2018. Faecal pellets collected prior to infection, and six days post-infection, and used to study changes in the methylation profile of organisms present in the intestine.
Default
Identification info
- Metadata Language
- English (en)
- Character set
- utf8
- Dataset Reference Date ()
- 2021-07-30
- Identifier
- NCBI / PRJNA600179
- Keywords
-
- Citrobacter rodentium
- Limitations on Public Access
- otherRestrictions
- Other constraints
- no limitations
- Topic category
-
- Health
Distribution Information
- Data format
-
-
BAM
()
-
BAM
()
- Resource Locator
-
Accession details for NCBI
Data held at NCBI under BioProject: PRJNA600179
- Resource Locator
-
Accession details for NCBI
Data held at NCBI under BioProject: PRJNA600179
- Quality Scope
- dataset
- Other
- dataset
Report
- Dataset Reference Date ()
- 2010-12-08
- Statement
- DNA was extracted from faecal pellets using Qiagen Powersoil kit and subject to Single-molecule real-time sequencing. Three biological replicates per sample consisting of : two AMR plasmids (either pC15-1a or RP4) which were either lacked (N) or were modified to express the m6A methyltransferase gene Tsp509I (T).
Metadata
- File identifier
- 80999d14-edb1-4f4b-ae80-823bcd3dea69 XML
- Metadata Language
- English (en)
- Character set
- ISO/IEC 8859-1 (also known as Latin 1)
- Resource type
- dataset
- Hierarchy level name
- dataset
- Metadata Date
- 2021-09-01T09:42:34
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3
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