Comparative transcriptomics of a complex of four European pine species
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Identification info
- Metadata Language
- English (en)
- Character set
- utf8
- Dataset Reference Date ()
- 2014-10-10
- Identifier
- CEH:EIDC: / 1412239567948
- Identifier
- doi: / 10.5285/b6900166-ded6-4f7a-8734-484b6f77b2f1
- Other citation details
- Wachowiak, W., Trivedi, U., Telford, A., Cavers, S. (2014). Comparative transcriptomics of a complex of four European pine species. NERC Environmental Information Data Centre 10.5285/b6900166-ded6-4f7a-8734-484b6f77b2f1
- Maintenance and update frequency
- notPlanned
- GEMET - INSPIRE themes, version 1.0 ()
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- Environmental Monitoring Facilities
- Limitations on Public Access
- otherRestrictions
- Other constraints
- no limitations
- Use constraints
- otherRestrictions
- Use constraints
- otherRestrictions
- Other constraints
- © UK Centre for Ecology & Hydrology
- Use constraints
- otherRestrictions
- Other constraints
- If you reuse this data, you should cite: Wachowiak, W., Trivedi, U., Telford, A., Cavers, S. (2014). Comparative transcriptomics of a complex of four European pine species. NERC Environmental Information Data Centre https://doi.org/10.5285/b6900166-ded6-4f7a-8734-484b6f77b2f1
- Spatial representation type
- textTable
- Topic category
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- Biota
- Begin date
- 2006-01-01
- End date
- 2008-12-31
- Code
- WGS 84
Distribution Information
- Data format
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Variant Call Format (VCF)
()
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Variant Call Format (VCF)
()
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Supporting Information
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Supporting Information
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- Quality Scope
- dataset
- Other
- dataset
Report
- Dataset Reference Date ()
- 2010-12-08
- Statement
- 1. Lineage of the reference transcriptome sequence of Scots pine samples from Glen Tanar (Scotland). Total Ribonucleic acid (RNA) was extracted from needles using Spectrum (TM) Plant Total RNA Kit (Sigma). A template complementary DNA (cDNA) library was prepared using ®TruSeq RNA Sample Preparation Kit (Illumina). The cDNA library was sequenced using Illumina HiSeq 2000 platform at Edinburgh Genomics, the University of Edinburgh, Scotland (Illumina, San Diego, California). 100 base, paired-end reads were generated and assembled de novo into contigs using Trinity (version r2012-06-08). The reference transcript sequence contains 40798 contigs in total. 2. The single nucleotide polymorphism (SNP) data file was prepared by aligning sixteen samples to the reference, a sample set that included P. sylvestris (four samples), P. mugo (five samples), P. uncinata (four samples) and P. uliginosa (three samples). Samples collected between 2006 and 2010.
Metadata
- File identifier
- b6900166-ded6-4f7a-8734-484b6f77b2f1 XML
- Metadata Language
- English (en)
- Character set
- ISO/IEC 8859-1 (also known as Latin 1)
- Resource type
- dataset
- Hierarchy level name
- dataset
- Metadata Date
- 2024-02-25T19:26:19
- Metadata standard name
- UK GEMINI
- Metadata standard version
- 2.3