dda6dd55-f955-4dd5-bc03-b07cc8548a3d
English
ISO/IEC 8859-1 (also known as Latin 1)
dataset
dataset
NERC EDS Environmental Information Data Centre
Lancaster Environment Centre, Library Avenue, Bailrigg
Lancaster
LA1 4AP
UK
info@eidc.ac.uk
https://eidc.ac.uk/
EIDC website
The Environmental Information Data Centre (EIDC) is the UK's national data centre for terrestrial and freshwater sciences.
information
pointOfContact
2024-03-12T11:29:01
UK GEMINI
2.3
WGS 84
Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017)
2019-02-11
publication
2018-12-15
creation
https://catalogue.ceh.ac.uk/id/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
doi:
Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Antibiotic susceptibility tests are presented as the zone of inhibition using the disc-diffusion method, and categorized as resistant, intermediate or susceptible. DNA samples from antibiotic-resistant bacteria were analysed for the presence or absence of resistance genes using polymerase chain reaction (PCR). Laboratory analyses were conducted by trained staff at the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). The aim of the study was to identify the antibiotic-susceptibility profiles and resistance genes of bacteria (Escherichia coli) obtained from humans, poultry and the environment. Bacterial isolates previously identified with resistance to third-generation cephalosporins or carbapenems were included in the analysis. Bacterial samples originated from rural households and poultry farms (broiler chickens) in Mirzapur, Tangail district; and urban food markets in Dhaka city, Bangladesh. Environmental samples included surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Dr Emily Rousham
Loughborough University
enquiries@ceh.ac.uk
pointOfContact
Rousham, E.K.
Loughborough University
enquiries@ceh.ac.uk
https://orcid.org/0000-0001-5654-9279
ORCID record
ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers.
information
author
Islam, M.A.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
https://orcid.org/0000-0001-5107-5289
ORCID record
ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers.
information
author
Unicomb, L.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
Asaduzzaman, M.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
https://orcid.org/0000-0001-9048-7980
ORCID record
ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique researcher identifiers and a transparent method of linking research activities and outputs to these identifiers.
information
author
Islam, R.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
Amin, B.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
Mozmader, T.I.M.A.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
Hossain, M.I.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
Rahman, M.
International Centre for Diarrhoeal Disease Research, Bangladesh
enquiries@ceh.ac.uk
author
NERC EDS Environmental Information Data Centre
enquiries@ceh.ac.uk
custodian
NERC Environmental Information Data Centre
enquiries@ceh.ac.uk
publisher
notPlanned
otherRestrictions
no limitations
otherRestrictions
© Loughborough University
otherRestrictions
© International Centre for Diarrhoeal Disease Research, Bangladesh
otherRestrictions
This resource is made available under the terms of the Open Government Licence
otherRestrictions
© Natural Environment Research Council
otherRestrictions
If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
textTable
English
utf8
health
2017-02-01
2018-10-31
87.284
98.402
20.314
29.926
Comma-separated values (CSV)
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
distributor
https://data-package.ceh.ac.uk/data/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Download the data
Download a copy of this data
download
https://data-package.ceh.ac.uk/sd/dda6dd55-f955-4dd5-bc03-b07cc8548a3d.zip
Supporting information
Supporting information available to assist in re-use of this dataset
information
dataset
dataset
Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
2010-12-08
Water (drinking, stream, waste and pond), soil and faecal samples were collected from farms and urban markets. Laboratory analysis of bacterial samples took place at International Centre for Diarrhoeal Disease Research , Dhaka, Bangladesh. Laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre. Reference organisms and Clinical and Laboratory Standard Institute (CLSI) guidelines were followed.