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  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive. The data consist of short-read sequencing data (Illumina HiSeq 4000 or Novaseq 6000) from several genetic clones and represents either whole genome sequencing data (from which single nucleotide polymorphisms can be derived) or whole genome methylation libraries (NEB Methyl-seq) from which cytosine methylation levels can be derived. Additional long read data (PacBio Sequel II) was used to create genome assemblies for two of the clones.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Molecular Biology Laboratory- European Bioinformatics Institute (EMBL-EBI) MetaboLights (https://www.ebi.ac.uk/metabolights), accession number MTBLS3749. Multi ‘omics’ data were collected from lines of Daphnia magna resurrected from Lake Ring (Denmark). The genome, methylome, transcriptome, accessible chromatin (ATAC), and metabolome was characterized from these lines, spanning >100 years.

  • The data comprise summary statistics for performance of a genotyping microarray for a test set of 87 samples for four pine species. The summary statistics comprise state (polymorphic, monomorphic), mean allele frequency and conversion rate, estimated for each locus as a mean across 87 sample genotypes. The array comprised 49,829 SNPs (single nucleotide polymorphisms) from several sources. The majority (N = 49,052) were obtained from transcriptome sequencing of four pine species: Pinus sylvestris, Pinus mugo, Pinus uncinata and Pinus uliginosa. The SNP set was filtered by the array manufacturer (Thermo Fisher) based on p-convert values signifying the SNP array quality, and a list of recommended and non-recommended SNP probes (avoiding SNPs with polymorphisms within 35 bp) was provided to the authors. These included SNPs that were common to all species and also SNPs fixed in one species and polymorphic within and among others. A further set of SNPs (N = 578) were included from candidate genes (N = 279), which had been resequenced in previous population genetic studies of the pine species. Variation in mitochondrial DNA (mtDNA) was targeted by inclusion of a set of mtDNA- specific SNPs (N = 14). Finally, a set of SNPs putatively associated with susceptibility to Dothistroma needle blight (discovered in Pinus radiata, European Nucleotide Archive accession numbers ERS1034542-53) were also included (N = 185). Full details about this dataset can be found at https://doi.org/10.5285/0ba33e96-67cb-4650-b2bd-6ee13fa7de97