Contact for the resource

EIDC

31 record(s)
 
Type of resources
Available actions
Topics
Keywords
Contact for the resource
Provided by
Years
Formats
Representation types
Update frequencies
Service types
Resolution
From 1 - 10 / 31
  • LCM2007 is a parcel-based thematic classification of satellite image data covering the entire United Kingdom. The map updates and upgrades the Land Cover Map of Great Britain (LCMGB) 1990 and LCM2000. Like the earlier 1990 and 2000 products, LCM2007 is derived from a computer classification of satellite scenes obtained mainly from Landsat, IRS and SPOT sensors. It also covers Northern Ireland and incorporates information derived from other ancillary datasets. LCM2007 was classified using a nomenclature corresponding to Joint Nature Conservation Committee (JNCC) Broad Habitats, which encompasses the entire range of UK habitats. In addition, it records further detail where possible, incorporating land cover classes sought by other users. LCM2007 is produced in both vector and raster formats, with a number of different versions containing varying levels of detail and at different spatial resolutions. Product consists of the dominant Target Class per 1km square, raster dataset (Northern Ireland only).

  • LCM2007 is a parcel-based thematic classification of satellite image data covering the entire United Kingdom. The map updates and upgrades the Land Cover Map of Great Britain (LCMGB) 1990 and LCM2000. Like the earlier 1990 and 2000 products, LCM2007 is derived from a computer classification of satellite scenes obtained mainly from Landsat, IRS and SPOT sensors. It also covers Northern Ireland and incorporates information derived from other ancillary datasets. LCM2007 was classified using a nomenclature corresponding to the Joint Nature Conservation Committee (JNCC) Broad Habitats, which encompasses the entire range of UK habitats. In addition, it recorded further detail where possible, incorporating land cover classes sought by other users. LCM2007 is produced in both vector and raster formats, with a number of different versions containing varying levels of detail and at different spatial resolutions. This dataset consists of 1km percentages per Target Class. Northern Ireland only.

  • This dataset identified bacteria able to grow in the presence of several Antibiotics in a British agricultural soil, by DNA stable isotope probing (SIP). The dataset was created with samples of the 'heavy' and 'light' fractions of the treatments and also from control soils. The 16S rRNA genes from these samples were amplified and sequenced by barcoded Illumina sequencing. Polymerase chain reaction (PCR) primers 515FB (GTGYCAGCMGCCGCGGTAA) and 806RB (GGACTACNVGGGTWTCTAAT) from the Earth Microbiome project targeting the V4 region of the 16S rRNA gene (approximately 250 nucleotides) were used. Library preparation and sequencing was performed at the National Oceanographic Centre (NOC) of the University of Southampton, UK, following methodologies described by Caporaso et al. (2012). Samples were pooled in an equimolar concentration and sequenced on separate runs for MiSeq using a 2 bp x 300 bp paired end protocol.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Molecular Biology Laboratory- European Bioinformatics Institute (EMBL-EBI) MetaboLights (https://www.ebi.ac.uk/metabolights), accession number MTBLS3749. Multi ‘omics’ data were collected from lines of Daphnia magna resurrected from Lake Ring (Denmark). The genome, methylome, transcriptome, accessible chromatin (ATAC), and metabolome was characterized from these lines, spanning >100 years.

  • The two Bioprojects contain RNA-Seq transcriptome sequences (fastQ files) resulting from studies investigating gene expression in wild field voles (Microtus agrestis). RNA sequences are derived from studies investigating the immune response of voles in relation to sex and genotype. Accession numbers PRJEB23617 and PRJEB51626 This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA) which is maintained by EMBL-EBI

  • Samples were collected from the slurry tank of a 200-cow dairy farm in the East Midlands once per month between June and October 2017 (n=5). Triplicate extractions were performed on each sample using two extraction kits: PowerFecal Kit (Qiagen) and Isolate II Fecal DNA kit (BioLine) (30 extractions in total). DNA was quantified using a Qubit fluorometer (Invitrogen) while quality was assessed via Nanodrop (ThermoFisher). Extracted DNA was stored at 4˚ C pending sequencing. Metagenomic shotgun sequencing of extracted slurry DNA was performed and demultiplexed by Edinburgh Genomics using the Illumina NovaSeq platform (150bp paired end library). Viral metagenomes were prepared firstly by homogenising cattle slurry in PBS. The homogenate was ultracentrifuged to pellet unwanted solids and bacteria. To further remove bacteria, the supernatant was passed sequentially through 0.45um and 0.22um filters. The filtrate was concentrated on an Amicon column and DNA was extracted using a standard phenol-chloroform extraction. Sequencing was conducted using Illumina Novaseq with a 2x150bp library. This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucletotide Archive.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the National Centre for Biotechnology Information (NCBI), BioProject accession number PRJNA777104. Multi ‘omics’ data were collected from lines of Daphnia magna resurrected from Lake Ring (Denmark). The genome, methylome, transcriptome, accessible chromatin (ATAC), and metabolome was characterized from these lines, spanning >100 years.

  • RNA sequence data (FASTq files) to identify the genes differentially expressed in response to cold in different Drosophila species. This data is NERC-funded but not held by the EIDC. This data is archived by NCBI under the BioProject accession number PRJNA822705 but access may be embargoed

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive. The data consist of short-read sequencing data (Illumina HiSeq 4000 or Novaseq 6000) from several genetic clones and represents either whole genome sequencing data (from which single nucleotide polymorphisms can be derived) or whole genome methylation libraries (NEB Methyl-seq) from which cytosine methylation levels can be derived. Additional long read data (PacBio Sequel II) was used to create genome assemblies for two of the clones.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA). This dataset contains sequences of the genomic DNA of gut microbiota of calves in response to preventive antibiotic therapy florfenicol obtained by DNA-seq. Importantly, the dataset also contains sequences of genes resistant to different antibiotics. The dataset was created from faecal samples (n=3) of the antibiotic treated animals over seven days and samples (n=3) of animals which have not been subjected to the antibiotic over the same time.