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  • This dataset contains whole genome sequence data for Wallacean endemic ungulates (anoa and babirusa) spanning from the 1800 to the present day. This time frame covers the period of accelerated forest loss across the Wallacean islands, to track changes in genetic health of these two flagship taxa. Deforestation is expected to disproportionately impact forest specialists such as the anoa and babirusa, making it crucial we understand how genetic health is impacted in declining populations. This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive.

  • 'This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA). Data consist of antisense RNA produced by calf gut microbiota in response to antibiotic treatment.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive. The data consist of short-read sequencing data (Illumina HiSeq 4000 or Novaseq 6000) from several genetic clones and represents either whole genome sequencing data (from which single nucleotide polymorphisms can be derived) or whole genome methylation libraries (NEB Methyl-seq) from which cytosine methylation levels can be derived. Additional long read data (PacBio Sequel II) was used to create genome assemblies for two of the clones.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA). This dataset contains sequences of the genomic DNA of gut microbiota of calves in response to preventive antibiotic therapy florfenicol obtained by DNA-seq. Importantly, the dataset also contains sequences of genes resistant to different antibiotics. The dataset was created from faecal samples (n=3) of the antibiotic treated animals over seven days and samples (n=3) of animals which have not been subjected to the antibiotic over the same time.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA) under accession number PRJEB36506. Guppy (Poecilia reticulata) colour traits have fascinated biologists for a hundred years, and present a unique system for investigating the evolution of colour polymorphism. The aim of this project is to identify regions of the guppy genome responsible for colour patterning in males of the species (the sex which shows colour patterning). Using pool-sequencing, we genotyped four inbred guppy lines (n=48 per line), which originate from a natural guppy population, Paria. Each line was founded by one male showing distinct colouration patterns, and has been backcrossed with unrelated females every generation for ~40 generations, allowing Y-linked colour to be inherited intact from father to son (iso-Y lines).

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA). This dataset contains sequences of 16S rRNA genes of gut microbiota of calves in response to preventive antibiotic therapy florfenicol by DNA-seq. The dataset was created from faecal samples (n=3) of the antibiotic treated animals over seven days and samples (n=3) of animals which have not been subjected to the antibiotic over the same time.

  • This data is NERC-funded but not held by the EIDC. This data is archived in the European Nucleotide Archive (ENA) under accession number PRJEB36347. The dataset contains whole-genome sequencing from 13 natural populations of the Trinidadian guppy (Poecillia reticulata) (n=272) sampled across a range of colour and predation schemes. Data were collected to investigate the ecological genomics of Negative Frequency Dependent Selection (NFDS). Guppy males are colourful, displaying a mosaic of complex and varied colouration patterns; in comparison, females are drab and inconspicuous. Females prefer rare males and rare males show higher reproductive fitness. Rare males also have a significantly higher survival advantage. This project used genome scans to identify the evolutionary signatures of NFDS.